Hoenn Team: Rayquaza, Rayquaza, Rayquaza, Rayquaza, Rayquaza, Rayquaza (I found a way in Emerald to Duplicate Pokemon :P)
Sinnoh Team: Blastoise (Shiny), Charizard (Shiny), Metagross, Crowbat (Shiny), Magnezone, Forgot my Grass type
Unova Team (6th Gym): Snivy (3rd Evo), Tadpole (3rd Evo), Daruma (2nd Evo), Archeops (2nd Evo), Forgot the 5th one, 6th empty
HeartGold (Replayed 3rd Gym): Chikorita (2nd Evo), Araidos, forgot my Bird